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For developers

For developers

Several libraries are available to support the creation and use of Phenopackets with HPO data.

Creation and Q/C

  • Phenopacket-tools
    An open-source Java library and command-line application for construction, conversion, and validation of phenopackets. Phenopacket-tools simplifies construction of phenopackets by providing concise builders, programmatic shortcuts, and predefined building blocks (ontology classes) for concepts such as anatomical organs, age of onset, biospecimen type, and clinical modifiers.
    GitHub PubMed

  • Phenopackets (Python library)
    The Phenopacket schema is defined using Protobuf which is “a language-neutral, platform-neutral extensible mechanism for serializing structured data”. This is the Python library generated from the protobuf distribution.
    PyPI

  • Phenopackets (Java library)
    The Phenopacket schema is defined using Protobuf which is “a language-neutral, platform-neutral extensible mechanism for serializing structured data”. This is the Java library generated from the protobuf distribution.
    Maven Central

  • Phenopackets (Rust library)
    The Phenopacket schema is defined using Protobuf which is “a language-neutral, platform-neutral extensible mechanism for serializing structured data”. This is the Rust library generated from the protobuf distribution.
    crates.io