1. labels Featured
2. Imported ontologies

Introduction

Imports directory:

*http://purl.obolibrary.org/obo/upheno/imports/

Currently the imports includes:

* imports/chebi_import.owl\ * imports/doid_import.owl\ * imports/go_import.owl\ * imports/mpath_import.owl\ * imports/pato_import.owl\ * imports/pr_import.owl\ * imports/uberon_import.owl\ * imports/wbbt_import.owl

Anatomy

To avoid multiple duplicate classes for heart, lung, skin etc we map all classes to [Uberon] where this is applicable. For more divergent species such as fly and C elegans we use the appropriate species-specific ontology.

Currently there are a small number of highly specific classes in FMA that are being used and have no corresponding class in Uberon

Methods

We use the OWLAPI SyntacticLocalityModularityExtractor, via [OWLTools]. See the http://purl.obolibrary.org/obo/upheno/Makefile for details